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r-packages



robinmap

Pacific-centered World Map

 Posted on March 10, 2022

Nicolas Casajus
robinmap
The goal of this R package is to map World countries in the Robinson projection system (or others CRS) centered on a different meridian than Greenwich. It uses 'Natural Earth' layers as base maps.
r-packages  spatial  world-map  projection-system 

messages

Print messages in the R console

 Posted on March 5, 2022

Nicolas Casajus
messages
This R package is a collection of functions to print messages in the R console using the packages 'cli' and 'crayon'. This package is strongly inspired from the functions ui_*() of the package 'usethis'.
r-packages  messages  colored-console 

rwoslite

An R client for the Web of Science Lite API

 Posted on February 28, 2022

Nicolas Casajus
rwoslite
An interface for the Web of Science Lite API. It allows users to write complexe requests to retrieve scientific publications metatata.
r-packages  api  web-of-science  scientific-publications 

Course on Reproducibility

Data toolbox for reproducible research in computational ecology

 Posted on November 29, 2021

Nicolas Casajus
Course on Reproducibility
The objective of this five-day course, in French, is to train young researchers in reproducibility, software development and version management tools applied to biodiversity research.
courses  reproducibility  compendium  git  github  rmarkdown  targets  renv  docker  r-packages 

mFD

A Computation of functional spaces and functional diversity indices

 Posted on November 5, 2021

Camille Magneville
mFD
Computing functional traits-based distances between pairs of species for species gathered in assemblages allowing to build several functional spaces. The package includes different graphical outputs.
r-packages  cran  ecology  traits  communities  diversity-indices 

popbayes

Bayesian model to estimate population trends from counts series

 Posted on November 5, 2021

Nicolas Casajus
popbayes
Infers trends of one or several populations over time from series of counts. It does so by accounting for count precision, smoothing the population rate of increase over time, and accounting for the maximum demographic potential of species.
r-packages  cran  animal-population  individual-counts  bayesian  temporal-trend 

rcompendium

Makes easier the creation of R package or research compendium

 Posted on April 17, 2021

Nicolas Casajus
rcompendium
The aim of this package is to make easier the creation of R package or research compendium (i.e. a predefined files/folders structure) so that users can focus on the code instead of wasting time organizing files. A full ready-to-work structure is set up with some additional cool features.
r-packages  cran  development  compendium  reproducibility  git  github 

worldpa

An R client to the World Database on Protected Areas API

 Posted on January 15, 2020

Nicolas Casajus
worldpa
An interface to the World Database on Protected Areas (WDPA) that allow users to download spatial geometries of protected areas for world countries using the WDPA API <https://api.protectedplanet.net>.
r-packages  api  protected-areas  spatial 

algaeClassify

An R package to determine phytoplankton functional groups

 Posted on May 20, 2019

Vijay P. Patil
algaeClassify
r-packages  cran  ecology  traits  phytoplankton 

ConR

Computes parameters used in preliminary assessment of conservation status

 Posted on October 31, 2016

Gilles Dauby
ConR
r-packages  cran  ecology  conservation  geographical-range  iucn 
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