Package index • forcis

Database tools

Functions to download and import FORCIS database

download_forcis_db(): Download the FORCIS database

read_cpr_north_data() read_cpr_south_data() read_plankton_nets_data() read_pump_data() read_sediment_trap_data(): Read FORCIS data

Database versions

Functions to get information on database versions

get_available_versions(): Get available versions of the FORCIS database

get_current_version(): Get the version of the FORCIS database currently used

get_version_metadata(): Print information of a specific version of the FORCIS database

Select and filters tools

Function to select and filter FORCIS data

select_forcis_columns(): Select columns in FORCIS data

select_taxonomy(): Select a taxonomy in FORCIS data

filter_by_species(): Filter FORCIS data by species

filter_by_month(): Filter FORCIS data by month of sampling

filter_by_year(): Filter FORCIS data by year of sampling

filter_by_bbox(): Filter FORCIS data by a spatial bounding box

filter_by_ocean(): Filter FORCIS data by ocean

filter_by_polygon(): Filter FORCIS data by a spatial polygon

Standardization functions

Functions to homogenize, compute, and aggregate FORCIS data

compute_abundances() compute_concentrations() compute_frequencies(): Compute count conversions

Visualization tools

Functions to visualize FORCIS data

geom_basemap(): Add a World basemap to a ggplot object

ggmap_data(): Map the spatial distribution of FORCIS data

plot_record_by_year(): Plot sample records by year

plot_record_by_month(): Plot sample records by month

plot_record_by_season(): Plot sample records by season

plot_record_by_depth(): Plot sample records by depth of collection

Utilities

Helper functions

convert_to_long_format(): Reshape and simplify FORCIS data

data_to_sf(): Convert a data frame into an sf object

get_ocean_names(): Get World ocean names

get_required_columns(): Get required column names

get_species_names(): Get species names from column names