Plot Distribution of Trait Coverages across all Sites — fb_plot_distribution_site_trait

Plots the distributions of trait coverage across site, i.e. the proportion of species weighted by abundance with known trait values, for each trait separately and all traits taken together. The trait distributions are ordered from the lowest to the highest average trait coverage (top to bottom). The top always displays a distribution named "all_traits" that contains the distribution of coverage all traits taken together.

Usage

fb_plot_distribution_site_trait_coverage(
  site_species,
  species_traits,
  species_categories = NULL,
  all_traits = TRUE
)

Arguments

site_species: a data.frame with sites in rows and species in columns. NOTE: the first column should be named "site" and indicate site names. The other columns should be named according to species names.
species_traits: a data.frame with species in rows and traits as columns. NOTE: The first column should be named "species" and contain species names. The other columns should be named according to trait names.
species_categories: (default = NULL) 2-columns data.frame giving species categories, with the first column describing the species name, and the second column giving their corresponding categories
all_traits: a logical (default = TRUE) which tell if the coverage considering all provided traits should be provided in an additional column all_traits

Value

a 'ggplot2' object

Examples

fb_plot_distribution_site_trait_coverage(site_species, species_traits)
#> Loading required namespace: ggridges
#> Picking joint bandwidth of 0.00988