Plot Trait Coverage per Site for each Trait — fb_plot_site_traits

Display a binary heatmap visualizing the site x traits matrix with colors displaying the proportion of occurring species with known trait values. Traits are ordered from the most to the least known (left to right). Sites are ordered from the ones with highest to lowest overall trait coverage (bottom to top). The site average proportion of species with known trait for each trait (across all sites) is shown in the x-axis labels. An additional column at the very right of the plot named "all_traits" shows a summary considering traits together.

Usage

fb_plot_site_traits_completeness(
  site_species,
  species_traits,
  species_categories = NULL,
  all_traits = TRUE
)

Arguments

site_species: a data.frame with sites in rows and species in columns. NOTE: the first column should be named "site" and indicate site names. The other columns should be named according to species names.
species_traits: a data.frame with species in rows and traits as columns. NOTE: The first column should be named "species" and contain species names. The other columns should be named according to trait names.
species_categories: (default = NULL) 2-columns data.frame giving species categories, with the first column describing the species name, and the second column giving their corresponding categories
all_traits: a logical (default = TRUE) which tell if the coverage considering all provided traits should be provided in an additional column all_traits

Value

a ggplot2 object

Examples

fb_plot_site_traits_completeness(site_species, species_traits)