Plot Trait Coverage per Species for each Trait

Display a binary heatmap visualizing the species x traits matrix with colors displaying present and missing traits. Traits are ordered from the most to the least known (left to right). Species are ordered from the ones with most to the ones with least traits (bottom to top). The proportion of species with non-missing traits is shown on the x-axis labels. An additional column at the very right of the plot named "all_traits" shows a summary considering if all other traits are known.

Usage

fb_plot_species_traits_missingness(
  species_traits,
  species_categories = NULL,
  all_traits = TRUE
)

Arguments

species_traits

a data.frame with species in rows and traits as columns. NOTE: The first column should be named "species" and contain species names. The other columns should be named according to trait names.

species_categories

2-columns data.frame giving species categories NULL by default, with the first column describing the species name, and the second column giving their corresponding categories

all_traits

a logical (default = TRUE) which tell if the coverage considering all provided traits should be provided in an additional column all_traits

Value

a ggplot2 object

Examples

data(species_traits)
fb_plot_species_traits_missingness(species_traits)