Plot Present and Missing Trait Combinations Frequencies — fb_plot_trait_combination

Display a figure of Present/Missing Trait Combinations where one square is represents one trait. The y-axis gives the frequency of the row (as well as its proportions compared to the total number of rows).

Usage

fb_plot_trait_combination_frequencies(
  species_traits,
  species_categories = NULL,
  order_by = c("number", "complete")
)

Arguments

species_traits: a data.frame with species in rows and traits as columns. NOTE: The first column should be named "species" and contain species names. The other columns should be named according to trait names.
species_categories: (default = NULL) 2-columns data.frame giving species categories, with the first column describing the species name, and the second column giving their corresponding categories
order_by: character(1) either "number" or "complete
If "number" order rows by frequency so that most frequent rows are at the bottom. Otherwise order rows to order table by the number of non-missing traits then by the frequency of combinations

Value

a ggplot2 object

Examples

# Ordered by number by default
fb_plot_trait_combination_frequencies(species_traits)


# Order by present traits
fb_plot_trait_combination_frequencies(species_traits, NULL, "complete")